Phytochemical screening, in vitro and in silico antibacterial investigation of Elaeocarpus ganitrus extract
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Abstract
This study evaluated phytochemical composition, and in vitro and in silico antibacterial activity of Elaeocarpus ganitrus extract. Elaeocarpus ganitrus leaves, seed and fruit powder were extracted with absolute ethanol. Then, the extract was identified phytochemical compounds qualitatively and evaluated the antibacterial activity through in vitro against Staphylococcus aureus and E. coli. Molecular docking was conducted to evaluate the antibacterial mechanism of Elaeocarpus ganitrus extract. Elaeocarpus ganitrus leaves, seeds, and fruits extract presented positive tannin, saponin, cardiac glycoside, quinone, steroids, terpenoids, and anthocyanins. In vitro analysis performed Elaeocarpus ganitrus leaves strong inhibited Staphylococcus aureus growth and medium inhibition against E. coli. structure activity relationship revealed 14 of 72 compounds have high antibacterial activities. molecular docking of 7 compounds showed inhibition activity of D-alanin ligase of Staphylococcus aureus. Those compounds blocked the activity of D-alanine ligase at inhibitor sites of enzyme, and might be disrupted the cell wall synthesis. In conclusion, Elaeocarpus ganitrus contained several phytochemical compounds and has antibacterial activity both in vitro and in silico investigation.
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Phytochemical screening, in vitro and in silico antibacterial investigation of Elaeocarpus ganitrus extract. (2024). Jurnal Biota, 10(1), 1-14. https://doi.org/10.19109/Biota.v10i1.20038
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How to Cite
Phytochemical screening, in vitro and in silico antibacterial investigation of Elaeocarpus ganitrus extract. (2024). Jurnal Biota, 10(1), 1-14. https://doi.org/10.19109/Biota.v10i1.20038
References
[1] G. Freer and M. Pistello, “Varicella-zoster virus infection: natural history, clinical manifestations, immunity and current and future vaccination strategies.,” New Microbiol., vol. 41, no. 2, pp. 95–105, Apr. 2018.
[2] S. A. Kularatne and C. Dalugama, “Dengue infection: Global importance, immunopathology and management.,” Clin. Med. Lond. Engl., vol. 22, no. 1, pp. 9–13, Jan. 2022, doi:10.7861/clinmed.2021-0791.
[3] K. A. Deets and R. E. Vance, “Inflammasomes and adaptive immune responses.,” Nat. Immunol., vol. 22, no. 4, pp. 412–422, Apr. 2021, doi:10.1038/s41590-021-00869-6.
[4] P. C. Calder, A. C. Carr, A. F. Gombart, and M. Eggersdorfer, “Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.,” Nutrients, vol. 12, no. 4, Apr. 2020, doi:10.3390/nu12041181.
[5] M. G. Netea et al., “Trained immunity: A program of innate immune memory in health and disease.,” Science, vol. 352, no. 6284, p. aaf1098, Apr. 2016, doi:10.1126/science.aaf1098.
[6] F. Pecora, F. Persico, A. Argentiero, C. Neglia, and S. Esposito, “The Role of Micronutrients in Support of the Immune Response against Viral Infections.,” Nutrients, vol. 12, no. 10, Oct. 2020, doi:10.3390/nu12103198.
[7] N. Samad et al., “Fat-Soluble Vitamins and the Current Global Pandemic of COVID-19: Evidence-Based Efficacy from Literature Review,” J. Inflamm. Res., vol. 14, no. null, pp. 2091–2110, May 2021, doi:10.2147/JIR.S307333.
[8] A. Allegra, G. Mirabile, R. Ettari, G. Pioggia, and S. Gangemi, “The Impact of Curcumin on Immune Response: An Immunomodulatory Strategy to Treat Sepsis.,” Int. J. Mol. Sci., vol. 23, no. 23, Nov. 2022, doi:10.3390/ijms232314710.
[9] Y. Dong, D. Dekens, P. De Deyn, P. Naudé, and U. Eisel, Targeting of Tumor Necrosis Factor Alpha Receptors as a Therapeutic Strategy for Neurodegenerative Disorders, vol. 4, no. 4. 2015. doi:10.3390/antib4040369.
[10] H. T. Phu, D. T. B. Thuan, T. H. D. Nguyen, A. M. Posadino, A. H. Eid, and G. Pintus, “Herbal Medicine for Slowing Aging and Aging-associated Conditions: Efficacy, Mechanisms and Safety.,” Curr. Vasc. Pharmacol., vol. 18, no. 4, pp. 369–393, 2020, doi:10.2174/1570161117666190715121939.
[11] A. Shaito et al., “Herbal Medicine for Cardiovascular Diseases: Efficacy, Mechanisms, and Safety.,” Front. Pharmacol., vol. 11, p. 422, 2020, doi:10.3389/fphar.2020.00422.
[12] V. P. Chavda et al., “Herbal Remedies, Nutraceuticals, and Dietary Supplements for COVID-19 Management: An Update.,” Clin. Complement. Med. Pharmacol., vol. 2, no. 1, p. 100021, Mar. 2022, doi:10.1016/j.ccmp.2022.100021.
[13] C. Frazzoli, G. Grasso, D. C. Husaini, D. N. Ajibo, F. C. Orish, and O. E. Orisakwe, “Immune System and Epidemics: The Role of African Indigenous Bioactive Substances.,” Nutrients, vol. 15, no. 2, Jan. 2023, doi:10.3390/nu15020273.
[14] J. Vijayaraghavan et al., “Structural studies and molecular dynamics simulations suggest a processive mechanism of exolytic lytic transglycosylase from Campylobacter jejuni,” PLoS ONE, vol. 13, no. 5, pp. 1–30, 2018, doi:10.1371/journal.pone.0197136:
[15] P. Prasannan, Y. Jeyaram, A. Pandian, R. Raju, and S. Sekar, “A Review on Taxonomy, Phytochemistry, Pharmacology, Threats and Conservation of Elaeocarpus L. (Elaeocarpaceae),” Bot. Rev., vol. 86, Aug. 2020, doi:10.1007/s12229-020-09229-9.
[16] P. S. Krishna et al., “In -silico molecular docking analysis of prodigiosin and cycloprodigiosin as COX-2 inhibitors,” SpringerPlus, vol. 2, no. 1, pp. 1–6, 2013, doi:10.1186/2193-1801-2-172.
[17] F. Brambach, M. Coode, S. Biagioni, and H. Culmsee, “Elaeocarpus firdausii (Elaeocarpaceae), a new species from tropical mountain forests of Sulawesi.,” PhytoKeys, no. 62, pp. 1–14, 2016, doi:10.3897/phytokeys.62.7548.
[18] A. Rohandi and G. Gunawan, “Sebaran Populasi dan Potensi Tanaman Ganitri (Elaeocarpus ganitrus Roxb ) di Jawa Tengah,” J. Ilmu Kehutan., vol. 8, no. 1, p. 25, 2015, doi:10.22146/jik.8550.
[19] S. Hardainiyan, B. Nandy, and K. Chaudhary, “Elaeocarpus Ganitrus (Rudraksha): A Reservoir Plant with their Pharmacological Effects,” Int. J. Pharm. Sci. Rev. Res., vol. 34, pp. 55–64, Oct. 2015.
[20] S. Joshi, P. Gupta, N. Kumar, N. Rai, P. Gautam, and A. Thapliyal, “A comprehensive report on therapeutic potential of Elaeocarpus ganitrus Roxb. (Rudraksha),” Environ. Conserv. J., vol. 13, pp. 147–150, Dec. 2012, doi:10.36953/ECJ.2012.130324.
[21] K. R. Das and K. Medhabati, “The Potential of Dark Purple Scented Rice- From Staple Food to Nutraceutical,” vol. 9, no. 3, pp. 867–876, 2014, doi:10.12944/CWE.9.3.38.
[22] D. Wu et al., “Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori.,” Proteins, vol. 72, no. 4, pp. 1148–1160, Sep. 2008, doi:10.1002/prot.22009.
[23] C. Jain, S. Khatana, and R. Vijayvergia, “Bioactivity of secondary metabolites of various plants: A review,” Int. J. Pharm. Sci. Res., vol. 10, no. 2, pp. 494–504, 2019, doi:10.13040/IJPSR.0975-8232.10(2).494-04.
[24] R. Deivasigamani, M. S. Devi, and T. Nadu, “Phytochemical analysis of elaeocarpus floribundus blume,” vol. 7, no. 10, pp. 1452–1457, 2018, doi:10.20959/wjpps201810-12506.
[25] S. Hardainiyan, B. Nandy, and R. Saxena, “Phytochemical investigation of fruit extract of Elaeocarpus ganitrus,” Int. J. Pharm. Pharm. Sci., vol. 7, pp. 415–418, Jun. 2015.
[26] A. Yashwant Kumar, K. Nandakumar, M. Handral, S. Talwar, and D. Dhayabaran, “Hypoglycaemic and anti-diabetic activity of stem bark extracts Erythrina indica in normal and alloxan-induced diabetic rats,” Saudi Pharm. J., vol. 19, no. 1, pp. 35–42, 2011, doi:10.1016/j.jsps.2010.10.001.
[27] L. Xie, H. Su, C. Sun, X. Zheng, and W. Chen, “Recent advances in understanding the anti-obesity activity of anthocyanins and their biosynthesis in microorganisms,” Trends Food Sci. Technol., vol. 72, no. September 2017, pp. 13–24, 2018, doi:10.1016/j.tifs.2017.12.002.
[28] F. R. Makhouri and J. B. Ghasemi, “In Silico Studies in Drug Research Against Neurodegenerative Diseases,” Curr. Neuropharmacol., vol. 16, no. 6, pp. 664–725, 2017, doi:10.2174/1570159x15666170823095628.
[29] R. Roghini and K. Vijayalakshmi, “Phytochemical Screening, Quantitative Analysis of Flavonoids and Minerals in Ethanolic Extract of Citrus Paradisi,” Int. J. Pharm. Sci. Res., vol. 9, no. 11, p. 4859, 2018, doi:10.13040/IJPSR.0975-8232.9(11).4859-64.
[30] R. Patel, P. K. Shukla, A. Verma, and M. P. Singh, “Pharmacognostical, phytochemical evaluation and insilico lead finding of Callicarpa macrophylla with hepatoprotective potentials,” J. Chem. Pharm. Res., vol. 8, no. 3, pp. 383–393, 2016.
[31] K. Soulef, Y. Abdelouahab, and B. Dalal, “Effect of glycosides extract of the medicinal plant Glycyrrhiza glabra L. from the region of Mlilli (southeast of Algeria) on the growth of some human pathogenic bacteria,” J. Sci. Innov. Res., vol. 3, pp. 28–34, Feb. 2014, doi:10.31254/jsir.2014.3106.
[32] N. Morsy, “Cardiac Glycosides in Medicinal Plants,” 2017. doi:10.5772/65963.
[33] J. Kaur, “A comprehensive review on metabolic syndrome,” Cardiol. Res. Pract., vol. 2014, no. March, 2014, doi:10.1155/2014/943162.
[34] S. Kaur, S. Gupta, and P. Gautam, “Phytochemical analysis of Eucalyptus leaves extract,” vol. 8, pp. 2442–2446, Jan. 2019.
[35] A. E. Al-Snafi, “The Pharmacological Importance of Bellis Perennis - A Review,” Inter J Phytother., vol. 5, no. 2, pp. 63–69, 2015.
[36] F. Fatchiyah, D. R. T. Sari, A. Safitri, and J. R. K. Cairns, “Phytochemical compound and nutritional value in black rice from Java Island, Indonesia,” Syst. Rev. Pharm., vol. 11, no. 7, 2020, doi:10.31838/srp.2020.7.61.
[37] D. P. Chachad, M. B. Talpade, and S. P. Jagdale, “Antimicrobial Activity of Rhizomes of Curcuma zedoaria Rosc.,” Int. J. Sci. Res., vol. 5, no. 11, pp. 938–940, 2016, doi:10.21275/ART20162324.
[38] D. A. Filimonov et al., “Prediction of the biological activity spectra of organic compounds using the pass online web resource,” Chem. Heterocycl. Compd., vol. 50, no. 3, pp. 444–457, 2014, doi:10.1007/s10593-014-1496-1.
[39] S. Liu et al., “Allosteric inhibition of Staphylococcus aureus d-alanine:d-alanine ligase revealed by crystallographic studies,” Proc. Natl. Acad. Sci., vol. 103, no. 41, pp. 15178–15183, Oct. 2006, doi:10.1073/pnas.0604905103.
[40] G. Bitencourt-Ferreira and W. F. J. de Azevedo, “Molegro Virtual Docker for Docking.,” Methods Mol. Biol. Clifton NJ, vol. 2053, pp. 149–167, 2019, doi:10.1007/978-1-4939-9752-7_10.
[41] K. Singh, M. Bhori, Y. A. Kasu, G. Bhat, and T. Marar, “Antioxidants as precision weapons in war against cancer chemotherapy induced toxicity – Exploring the armoury of obscurity,” Saudi Pharm. J., vol. 26, no. 2, pp. 177–190, 2018, doi:10.1016/j.jsps.2017.12.013.
[42] S. Tripathy, A. Mida, and S. Swain, “Phytochemical Screening And Thin Layer Chromatographic Studies Of Elaeocarpus Ganitrus Seed The Magical Electromagnetic Bead (Rudraksha),” Int. J. Pharm. Biol. Sci., vol. 6, pp. 16–24, Jul. 2016, doi:10.21276/ijpbs.2016.6.3.3.
[43] P. R. Talukdar, S. Rathi, K. Pathak, S. K. Chetia, and R. N. Sarma, “Population Structure and Marker-Trait Association in Indigenous Aromatic Rice,” Rice Sci., vol. 24, no. 3, pp. 145–154, 2017, doi:10.1016/j.rsci.2016.08.009.
[44] S. E. Sudradjat and K. H. Timotius, “Pharmacological properties and phytochemical components of Elaeocarpus: A comparative study,” Phytomedicine Plus, vol. 2, no. 4, p. 100365, 2022, doi:10.1016/j.phyplu.2022.100365.
[45] C. N. Primiani, Pujiati, and M. A. Setiawan, “ Bioactive Compounds Profile of Alkaloid on Elaeocarpus sphaericus Schum Seeds by Liquid Chromatography-Mass Spectrometry ,” Proc. 2nd Int. Conf. Educ. Technol. ICETECH 2021, vol. 630, no. Icetech 2021, pp. 120–125, 2022, doi:10.2991/assehr.k.220103.019.
[46] S. R. Lakshmi, T. S. Kumar, and M. V Rao, “Phytochemical Analysis, Histochemical localization and Antioxidant Activity of Hoya wightii ssp. palniensis and Elaeocarpus recurvatus,” Am. J. Phytomedicine Clin. Ther., vol. 2, no. 3, pp. 357–366, 2014.
[47] R. P. Rastogi and R. P. Sinha, “Review article : Apoptosis : Molecular Mechanisms And Pathogenicity,” Excli J., vol. 8, pp. 155–181, 2009.
[48] S. Sumana, S. K A., J. D., C. Raviswamy, M. Seema, and D. Ns, Antimicrobial Assay of Elaeocarpus Species of Western Ghats of Karnataka. 2015.
[49] A. K. Sharma, M. Gangwar, D. Kumar, G. Nath, A. S. Kumar Sinha, and Y. B. Tripathi, “Phytochemical characterization, antimicrobial activity and reducing potential of seed oil, latex, machine oil and presscake of Jatropha curcas.,” Avicenna J. Phytomedicine, vol. 6, no. 4, pp. 366–375, 2016.
[50] D. V C, S. Sumathi, F. Athikkavil, and K. Elyas, “Isolation And Identification Of Endophytic Fungi With Antimicrobial Activities From The Leaves Of Elaeocarpus Sphaericus (Gaertn.) K. Schum. And Myristica Fragrans Houtt.,” Int. J. Pharm. Sci. Res., Jul. 2018, doi:10.13040/IJPSR.0975-8232.9(7).2783-91.
[51] J. Chockalingam, R. Monica, and S. Ramasamy, “Antibiofilm Activity Of Elaeocarpus ganitrus Against Methicillin Resistant Staphylococcus species (MRSS) Causing Bovine Mastitis,” Plant Cell Biotechnol. Mol. Biol., pp. 339–355, Jan. 2021.
[52] J. Dalei, “Evaluation Of Antimicrobial Activity And Phytochemical Screening Of Epicarp And Endocarp Parts Of Elaeocarpus Ganitrus,” Int. J. Pharma Bio Sci., vol. 7, pp. 265–269, Apr. 2016.
[53] L. Cui, A. Iwamoto, J.-Q. Lian, H. Neoh, Y. Horikawa, and K. Hiramatsu, “Novel Mechanism of Antibiotic Resistance Originating in Vancomycin-Intermediate,” Antimicrob. Agents Chemother., vol. 50, p. 428, Jan. 2006, doi:10.1128/AAC.50.2.428-438.2006.
[54] P. Szweda, M. Schielmann, R. Kotlowski, G. Gorczyca, M. Zalewska, and S. Milewski, “Peptidoglycan hydrolases-potential weapons against Staphylococcus aureus.,” Appl. Microbiol. Biotechnol., vol. 96, no. 5, pp. 1157–1174, Dec. 2012, doi:10.1007/s00253-012-4484-3.
[55] J. F. Fisher and S. Mobashery, “β-Lactams against the Fortress of the Gram-Positive Staphylococcus aureus Bacterium.,” Chem. Rev., vol. 121, no. 6, pp. 3412–3463, Mar. 2021, doi:10.1021/acs.chemrev.0c01010.
[56] I. Kandida, M. Tari, and A. Fatiqin, “Effectiveness of the Combination of Green Betel Leaf Extract (Piper betle) and Mint Leaf (Mentha piperita) as Antibacterials against Streptococcus mutans,” Bioactivities, vol. 1, no. 1, pp. 32–38, Jun. 2023, doi:10.47352/bioactivities.2963-654X.184.
[57] N. Hasan, A. Rachmayanti, and E. Masaenah, “Antibacterial Activity Test of Meniran Herb Extract (Phyllanthus Niruri L.) against Staphylococcus Epidermidis and Klebsiella Pneumoniae,” Sci. Midwifery, vol. 10, pp. 3876–3885, Nov. 2022, doi:10.35335/midwifery.v10i5.927.
[58] M. Rizki, U. Harahap, and P. Sitorus, “Phytochemical Screening of Phaleria macrocarpa (Scheff.) Boerl.) and Antibacterial Activity Test of Ethanol Extract Against Staphylococcus aureus Bacteria,” Int. J. Sci. Technol. Manag., vol. 4, no. 2, pp. 422–427, 2023, doi:10.46729/ijstm.v4i2.781.
[59] P. Aelenei, A. Miron, A. Trifan, A. Bujor, E. Gille, and A. C. Aprotosoaie, “Essential Oils and Their Components as Modulators of Antibiotic Activity against Gram-Negative Bacteria.,” Med. Basel Switz., vol. 3, no. 3, Jul. 2016, doi:10.3390/medicines3030019.
[60] B. Muchtaromah, E. S. Safitri, P. D. Fitriasari, and J. Istiwandhani, “Antibacterial activities of Curcuma mangga Val. extract in some solvents to Staphylococcus aureus and Escherichia coli,” AIP Conf. Proc., vol. 2231, no. 1, p. 30005, Apr. 2020, doi:10.1063/5.0002490.
[61] E. G. Salem, A. El Hissewy, N. F. Agamy, and D. Abd El Barry, “Assessment of the quality of bran and bran oil produced from some Egyptian rice varieties,” J. Egypt. Public Health Assoc., vol. 89, no. 1, pp. 29–34, 2014, doi:10.1097/01.EPX.0000443988.38424.9d.
[62] C. N. Tagousop, J.-D. Tamokou, S. E. Ekom, D. Ngnokam, and L. Voutquenne-Nazabadioko, “Antimicrobial activities of flavonoid glycosides from Graptophyllum grandulosum and their mechanism of antibacterial action.,” BMC Complement. Altern. Med., vol. 18, no. 1, p. 252, Sep. 2018, doi:10.1186/s12906-018-2321-7.
[63] N. F. Shamsudin et al., “Antibacterial Effects of Flavonoids and Their Structure-Activity Relationship Study: A Comparative Interpretation.,” Mol. Basel Switz., vol. 27, no. 4, Feb. 2022, doi:10.3390/molecules27041149.
[64] D. Mabhiza, T. Chitemerere, and S. Mukanganyama, “Antibacterial Properties of Alkaloid Extracts from Callistemon citrinus and Vernonia adoensis against Staphylococcus aureus and Pseudomonas aeruginosa.,” Int. J. Med. Chem., vol. 2016, p. 6304163, 2016, doi:10.1155/2016/6304163.
[65] Y. Bare, D. R. T. Sari, M. C. Mogi, and M. M. D. Nurak, “Fucodiphlorethol Dan Phloroglucinol Alga Coklat Sebagai Inhibitor Lipase Secara In Silico,” Florea J. Biol. Dan Pembelajarannya, vol. 9, no. 1, pp. 53–59, 2022.
[66] G. C. Sari, Dewi Ratih Tirto; Krisnamurti, “1-dehydrogingerdione , Senyawa Volatil Jahe sebagai Agen Sedatif subtitutif γ - aminobutyrate ( GABA ); Kajian Biokomputasi,” Pros. Semin. Nas. Biol., vol. 7, no. 1, pp. 389–395, 2021, doi:10.24252/psb.v7i1.24709.
[67] G. C. Krisnamurti and D. R. T. Sari, “Unveiling the Potency of Coriandrum sativum as Repellent for Antimalarial : In silico Study,” Proceeding Int. Conf. Relig. Sci. Educ., vol. 2, pp. 563–567, 2023.
[68] D. R. T. Sari and G. C. Krisnamurti, “In Silico Repositioning Strategies of Theobromine and Caffeine for Psychiatric and Neurological Disorders,” Proceeding Int. Conf. Relig. Sci. Educ., vol. 1, pp. 685–692, 2022.
[69] Y. Bare, F. N. S. Timba, M. M. D. Nurak, and D. R. T. Sari, “Analisis In silico Heksosa, D-Manitol dan Asam Malat Kulit Kopi sebagai Penghambat Infeksi Virus Corona,” Biota J. Ilm. Ilmu-Ilmu Hayati, vol. 8, no. 2, pp. 41–48, 2023, doi:10.24002/biota.v8i2.5970.
[70] D. R. T. Sari, A. Safitri, J. R. K. Cairns, and F. Fatchiyah, “Anti-Apoptotic Activity of Anthocyanins has Potential to inhibit Caspase-3 Signaling,” J. Trop. Life Sci., vol. 10, no. 1, pp. 15–25, 2020, doi:10.11594/jtls.10.01.03.
[71] D. R. T. Sari, M. E. Pranoto, and S. Z. Azkiyah, “Kajian Farmakoinformatika Senyawa Alkaloid Anggur Laut (Caulerpa racemose) Sebagai Inhibitor Collagenase Dalam Mekanisme Antiaging,” Florea J. Biol. Dan Pembelajarannya, vol. 9, no. 2, pp. 127–133, 2022, doi:10.25273/florea.v9i2.14434.
[72] J. L. Pederick, A. P. Thompson, S. G. Bell, and J. B. Bruning, “d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations.,” J. Biol. Chem., vol. 295, no. 23, pp. 7894–7904, Jun. 2020, doi:10.1074/jbc.RA120.012936.
[73] S. Yang et al., “The Biological Properties and Potential Interacting Proteins of d-Alanyl-d-alanine Ligase A from Mycobacterium tuberculosis.,” Mol. Basel Switz., vol. 23, no. 2, Feb. 2018, doi:10.3390/molecules23020324.
[74] J. J. May et al., “Inhibition of the D-alanine:D-alanyl carrier protein ligase from Bacillus subtilis increases the bacterium’s susceptibility to antibiotics that target the cell wall.,” FEBS J., vol. 272, no. 12, pp. 2993–3003, Jun. 2005, doi:10.1111/j.1742-4658.2005.04700.x.
[2] S. A. Kularatne and C. Dalugama, “Dengue infection: Global importance, immunopathology and management.,” Clin. Med. Lond. Engl., vol. 22, no. 1, pp. 9–13, Jan. 2022, doi:10.7861/clinmed.2021-0791.
[3] K. A. Deets and R. E. Vance, “Inflammasomes and adaptive immune responses.,” Nat. Immunol., vol. 22, no. 4, pp. 412–422, Apr. 2021, doi:10.1038/s41590-021-00869-6.
[4] P. C. Calder, A. C. Carr, A. F. Gombart, and M. Eggersdorfer, “Optimal Nutritional Status for a Well-Functioning Immune System Is an Important Factor to Protect against Viral Infections.,” Nutrients, vol. 12, no. 4, Apr. 2020, doi:10.3390/nu12041181.
[5] M. G. Netea et al., “Trained immunity: A program of innate immune memory in health and disease.,” Science, vol. 352, no. 6284, p. aaf1098, Apr. 2016, doi:10.1126/science.aaf1098.
[6] F. Pecora, F. Persico, A. Argentiero, C. Neglia, and S. Esposito, “The Role of Micronutrients in Support of the Immune Response against Viral Infections.,” Nutrients, vol. 12, no. 10, Oct. 2020, doi:10.3390/nu12103198.
[7] N. Samad et al., “Fat-Soluble Vitamins and the Current Global Pandemic of COVID-19: Evidence-Based Efficacy from Literature Review,” J. Inflamm. Res., vol. 14, no. null, pp. 2091–2110, May 2021, doi:10.2147/JIR.S307333.
[8] A. Allegra, G. Mirabile, R. Ettari, G. Pioggia, and S. Gangemi, “The Impact of Curcumin on Immune Response: An Immunomodulatory Strategy to Treat Sepsis.,” Int. J. Mol. Sci., vol. 23, no. 23, Nov. 2022, doi:10.3390/ijms232314710.
[9] Y. Dong, D. Dekens, P. De Deyn, P. Naudé, and U. Eisel, Targeting of Tumor Necrosis Factor Alpha Receptors as a Therapeutic Strategy for Neurodegenerative Disorders, vol. 4, no. 4. 2015. doi:10.3390/antib4040369.
[10] H. T. Phu, D. T. B. Thuan, T. H. D. Nguyen, A. M. Posadino, A. H. Eid, and G. Pintus, “Herbal Medicine for Slowing Aging and Aging-associated Conditions: Efficacy, Mechanisms and Safety.,” Curr. Vasc. Pharmacol., vol. 18, no. 4, pp. 369–393, 2020, doi:10.2174/1570161117666190715121939.
[11] A. Shaito et al., “Herbal Medicine for Cardiovascular Diseases: Efficacy, Mechanisms, and Safety.,” Front. Pharmacol., vol. 11, p. 422, 2020, doi:10.3389/fphar.2020.00422.
[12] V. P. Chavda et al., “Herbal Remedies, Nutraceuticals, and Dietary Supplements for COVID-19 Management: An Update.,” Clin. Complement. Med. Pharmacol., vol. 2, no. 1, p. 100021, Mar. 2022, doi:10.1016/j.ccmp.2022.100021.
[13] C. Frazzoli, G. Grasso, D. C. Husaini, D. N. Ajibo, F. C. Orish, and O. E. Orisakwe, “Immune System and Epidemics: The Role of African Indigenous Bioactive Substances.,” Nutrients, vol. 15, no. 2, Jan. 2023, doi:10.3390/nu15020273.
[14] J. Vijayaraghavan et al., “Structural studies and molecular dynamics simulations suggest a processive mechanism of exolytic lytic transglycosylase from Campylobacter jejuni,” PLoS ONE, vol. 13, no. 5, pp. 1–30, 2018, doi:10.1371/journal.pone.0197136:
[15] P. Prasannan, Y. Jeyaram, A. Pandian, R. Raju, and S. Sekar, “A Review on Taxonomy, Phytochemistry, Pharmacology, Threats and Conservation of Elaeocarpus L. (Elaeocarpaceae),” Bot. Rev., vol. 86, Aug. 2020, doi:10.1007/s12229-020-09229-9.
[16] P. S. Krishna et al., “In -silico molecular docking analysis of prodigiosin and cycloprodigiosin as COX-2 inhibitors,” SpringerPlus, vol. 2, no. 1, pp. 1–6, 2013, doi:10.1186/2193-1801-2-172.
[17] F. Brambach, M. Coode, S. Biagioni, and H. Culmsee, “Elaeocarpus firdausii (Elaeocarpaceae), a new species from tropical mountain forests of Sulawesi.,” PhytoKeys, no. 62, pp. 1–14, 2016, doi:10.3897/phytokeys.62.7548.
[18] A. Rohandi and G. Gunawan, “Sebaran Populasi dan Potensi Tanaman Ganitri (Elaeocarpus ganitrus Roxb ) di Jawa Tengah,” J. Ilmu Kehutan., vol. 8, no. 1, p. 25, 2015, doi:10.22146/jik.8550.
[19] S. Hardainiyan, B. Nandy, and K. Chaudhary, “Elaeocarpus Ganitrus (Rudraksha): A Reservoir Plant with their Pharmacological Effects,” Int. J. Pharm. Sci. Rev. Res., vol. 34, pp. 55–64, Oct. 2015.
[20] S. Joshi, P. Gupta, N. Kumar, N. Rai, P. Gautam, and A. Thapliyal, “A comprehensive report on therapeutic potential of Elaeocarpus ganitrus Roxb. (Rudraksha),” Environ. Conserv. J., vol. 13, pp. 147–150, Dec. 2012, doi:10.36953/ECJ.2012.130324.
[21] K. R. Das and K. Medhabati, “The Potential of Dark Purple Scented Rice- From Staple Food to Nutraceutical,” vol. 9, no. 3, pp. 867–876, 2014, doi:10.12944/CWE.9.3.38.
[22] D. Wu et al., “Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori.,” Proteins, vol. 72, no. 4, pp. 1148–1160, Sep. 2008, doi:10.1002/prot.22009.
[23] C. Jain, S. Khatana, and R. Vijayvergia, “Bioactivity of secondary metabolites of various plants: A review,” Int. J. Pharm. Sci. Res., vol. 10, no. 2, pp. 494–504, 2019, doi:10.13040/IJPSR.0975-8232.10(2).494-04.
[24] R. Deivasigamani, M. S. Devi, and T. Nadu, “Phytochemical analysis of elaeocarpus floribundus blume,” vol. 7, no. 10, pp. 1452–1457, 2018, doi:10.20959/wjpps201810-12506.
[25] S. Hardainiyan, B. Nandy, and R. Saxena, “Phytochemical investigation of fruit extract of Elaeocarpus ganitrus,” Int. J. Pharm. Pharm. Sci., vol. 7, pp. 415–418, Jun. 2015.
[26] A. Yashwant Kumar, K. Nandakumar, M. Handral, S. Talwar, and D. Dhayabaran, “Hypoglycaemic and anti-diabetic activity of stem bark extracts Erythrina indica in normal and alloxan-induced diabetic rats,” Saudi Pharm. J., vol. 19, no. 1, pp. 35–42, 2011, doi:10.1016/j.jsps.2010.10.001.
[27] L. Xie, H. Su, C. Sun, X. Zheng, and W. Chen, “Recent advances in understanding the anti-obesity activity of anthocyanins and their biosynthesis in microorganisms,” Trends Food Sci. Technol., vol. 72, no. September 2017, pp. 13–24, 2018, doi:10.1016/j.tifs.2017.12.002.
[28] F. R. Makhouri and J. B. Ghasemi, “In Silico Studies in Drug Research Against Neurodegenerative Diseases,” Curr. Neuropharmacol., vol. 16, no. 6, pp. 664–725, 2017, doi:10.2174/1570159x15666170823095628.
[29] R. Roghini and K. Vijayalakshmi, “Phytochemical Screening, Quantitative Analysis of Flavonoids and Minerals in Ethanolic Extract of Citrus Paradisi,” Int. J. Pharm. Sci. Res., vol. 9, no. 11, p. 4859, 2018, doi:10.13040/IJPSR.0975-8232.9(11).4859-64.
[30] R. Patel, P. K. Shukla, A. Verma, and M. P. Singh, “Pharmacognostical, phytochemical evaluation and insilico lead finding of Callicarpa macrophylla with hepatoprotective potentials,” J. Chem. Pharm. Res., vol. 8, no. 3, pp. 383–393, 2016.
[31] K. Soulef, Y. Abdelouahab, and B. Dalal, “Effect of glycosides extract of the medicinal plant Glycyrrhiza glabra L. from the region of Mlilli (southeast of Algeria) on the growth of some human pathogenic bacteria,” J. Sci. Innov. Res., vol. 3, pp. 28–34, Feb. 2014, doi:10.31254/jsir.2014.3106.
[32] N. Morsy, “Cardiac Glycosides in Medicinal Plants,” 2017. doi:10.5772/65963.
[33] J. Kaur, “A comprehensive review on metabolic syndrome,” Cardiol. Res. Pract., vol. 2014, no. March, 2014, doi:10.1155/2014/943162.
[34] S. Kaur, S. Gupta, and P. Gautam, “Phytochemical analysis of Eucalyptus leaves extract,” vol. 8, pp. 2442–2446, Jan. 2019.
[35] A. E. Al-Snafi, “The Pharmacological Importance of Bellis Perennis - A Review,” Inter J Phytother., vol. 5, no. 2, pp. 63–69, 2015.
[36] F. Fatchiyah, D. R. T. Sari, A. Safitri, and J. R. K. Cairns, “Phytochemical compound and nutritional value in black rice from Java Island, Indonesia,” Syst. Rev. Pharm., vol. 11, no. 7, 2020, doi:10.31838/srp.2020.7.61.
[37] D. P. Chachad, M. B. Talpade, and S. P. Jagdale, “Antimicrobial Activity of Rhizomes of Curcuma zedoaria Rosc.,” Int. J. Sci. Res., vol. 5, no. 11, pp. 938–940, 2016, doi:10.21275/ART20162324.
[38] D. A. Filimonov et al., “Prediction of the biological activity spectra of organic compounds using the pass online web resource,” Chem. Heterocycl. Compd., vol. 50, no. 3, pp. 444–457, 2014, doi:10.1007/s10593-014-1496-1.
[39] S. Liu et al., “Allosteric inhibition of Staphylococcus aureus d-alanine:d-alanine ligase revealed by crystallographic studies,” Proc. Natl. Acad. Sci., vol. 103, no. 41, pp. 15178–15183, Oct. 2006, doi:10.1073/pnas.0604905103.
[40] G. Bitencourt-Ferreira and W. F. J. de Azevedo, “Molegro Virtual Docker for Docking.,” Methods Mol. Biol. Clifton NJ, vol. 2053, pp. 149–167, 2019, doi:10.1007/978-1-4939-9752-7_10.
[41] K. Singh, M. Bhori, Y. A. Kasu, G. Bhat, and T. Marar, “Antioxidants as precision weapons in war against cancer chemotherapy induced toxicity – Exploring the armoury of obscurity,” Saudi Pharm. J., vol. 26, no. 2, pp. 177–190, 2018, doi:10.1016/j.jsps.2017.12.013.
[42] S. Tripathy, A. Mida, and S. Swain, “Phytochemical Screening And Thin Layer Chromatographic Studies Of Elaeocarpus Ganitrus Seed The Magical Electromagnetic Bead (Rudraksha),” Int. J. Pharm. Biol. Sci., vol. 6, pp. 16–24, Jul. 2016, doi:10.21276/ijpbs.2016.6.3.3.
[43] P. R. Talukdar, S. Rathi, K. Pathak, S. K. Chetia, and R. N. Sarma, “Population Structure and Marker-Trait Association in Indigenous Aromatic Rice,” Rice Sci., vol. 24, no. 3, pp. 145–154, 2017, doi:10.1016/j.rsci.2016.08.009.
[44] S. E. Sudradjat and K. H. Timotius, “Pharmacological properties and phytochemical components of Elaeocarpus: A comparative study,” Phytomedicine Plus, vol. 2, no. 4, p. 100365, 2022, doi:10.1016/j.phyplu.2022.100365.
[45] C. N. Primiani, Pujiati, and M. A. Setiawan, “ Bioactive Compounds Profile of Alkaloid on Elaeocarpus sphaericus Schum Seeds by Liquid Chromatography-Mass Spectrometry ,” Proc. 2nd Int. Conf. Educ. Technol. ICETECH 2021, vol. 630, no. Icetech 2021, pp. 120–125, 2022, doi:10.2991/assehr.k.220103.019.
[46] S. R. Lakshmi, T. S. Kumar, and M. V Rao, “Phytochemical Analysis, Histochemical localization and Antioxidant Activity of Hoya wightii ssp. palniensis and Elaeocarpus recurvatus,” Am. J. Phytomedicine Clin. Ther., vol. 2, no. 3, pp. 357–366, 2014.
[47] R. P. Rastogi and R. P. Sinha, “Review article : Apoptosis : Molecular Mechanisms And Pathogenicity,” Excli J., vol. 8, pp. 155–181, 2009.
[48] S. Sumana, S. K A., J. D., C. Raviswamy, M. Seema, and D. Ns, Antimicrobial Assay of Elaeocarpus Species of Western Ghats of Karnataka. 2015.
[49] A. K. Sharma, M. Gangwar, D. Kumar, G. Nath, A. S. Kumar Sinha, and Y. B. Tripathi, “Phytochemical characterization, antimicrobial activity and reducing potential of seed oil, latex, machine oil and presscake of Jatropha curcas.,” Avicenna J. Phytomedicine, vol. 6, no. 4, pp. 366–375, 2016.
[50] D. V C, S. Sumathi, F. Athikkavil, and K. Elyas, “Isolation And Identification Of Endophytic Fungi With Antimicrobial Activities From The Leaves Of Elaeocarpus Sphaericus (Gaertn.) K. Schum. And Myristica Fragrans Houtt.,” Int. J. Pharm. Sci. Res., Jul. 2018, doi:10.13040/IJPSR.0975-8232.9(7).2783-91.
[51] J. Chockalingam, R. Monica, and S. Ramasamy, “Antibiofilm Activity Of Elaeocarpus ganitrus Against Methicillin Resistant Staphylococcus species (MRSS) Causing Bovine Mastitis,” Plant Cell Biotechnol. Mol. Biol., pp. 339–355, Jan. 2021.
[52] J. Dalei, “Evaluation Of Antimicrobial Activity And Phytochemical Screening Of Epicarp And Endocarp Parts Of Elaeocarpus Ganitrus,” Int. J. Pharma Bio Sci., vol. 7, pp. 265–269, Apr. 2016.
[53] L. Cui, A. Iwamoto, J.-Q. Lian, H. Neoh, Y. Horikawa, and K. Hiramatsu, “Novel Mechanism of Antibiotic Resistance Originating in Vancomycin-Intermediate,” Antimicrob. Agents Chemother., vol. 50, p. 428, Jan. 2006, doi:10.1128/AAC.50.2.428-438.2006.
[54] P. Szweda, M. Schielmann, R. Kotlowski, G. Gorczyca, M. Zalewska, and S. Milewski, “Peptidoglycan hydrolases-potential weapons against Staphylococcus aureus.,” Appl. Microbiol. Biotechnol., vol. 96, no. 5, pp. 1157–1174, Dec. 2012, doi:10.1007/s00253-012-4484-3.
[55] J. F. Fisher and S. Mobashery, “β-Lactams against the Fortress of the Gram-Positive Staphylococcus aureus Bacterium.,” Chem. Rev., vol. 121, no. 6, pp. 3412–3463, Mar. 2021, doi:10.1021/acs.chemrev.0c01010.
[56] I. Kandida, M. Tari, and A. Fatiqin, “Effectiveness of the Combination of Green Betel Leaf Extract (Piper betle) and Mint Leaf (Mentha piperita) as Antibacterials against Streptococcus mutans,” Bioactivities, vol. 1, no. 1, pp. 32–38, Jun. 2023, doi:10.47352/bioactivities.2963-654X.184.
[57] N. Hasan, A. Rachmayanti, and E. Masaenah, “Antibacterial Activity Test of Meniran Herb Extract (Phyllanthus Niruri L.) against Staphylococcus Epidermidis and Klebsiella Pneumoniae,” Sci. Midwifery, vol. 10, pp. 3876–3885, Nov. 2022, doi:10.35335/midwifery.v10i5.927.
[58] M. Rizki, U. Harahap, and P. Sitorus, “Phytochemical Screening of Phaleria macrocarpa (Scheff.) Boerl.) and Antibacterial Activity Test of Ethanol Extract Against Staphylococcus aureus Bacteria,” Int. J. Sci. Technol. Manag., vol. 4, no. 2, pp. 422–427, 2023, doi:10.46729/ijstm.v4i2.781.
[59] P. Aelenei, A. Miron, A. Trifan, A. Bujor, E. Gille, and A. C. Aprotosoaie, “Essential Oils and Their Components as Modulators of Antibiotic Activity against Gram-Negative Bacteria.,” Med. Basel Switz., vol. 3, no. 3, Jul. 2016, doi:10.3390/medicines3030019.
[60] B. Muchtaromah, E. S. Safitri, P. D. Fitriasari, and J. Istiwandhani, “Antibacterial activities of Curcuma mangga Val. extract in some solvents to Staphylococcus aureus and Escherichia coli,” AIP Conf. Proc., vol. 2231, no. 1, p. 30005, Apr. 2020, doi:10.1063/5.0002490.
[61] E. G. Salem, A. El Hissewy, N. F. Agamy, and D. Abd El Barry, “Assessment of the quality of bran and bran oil produced from some Egyptian rice varieties,” J. Egypt. Public Health Assoc., vol. 89, no. 1, pp. 29–34, 2014, doi:10.1097/01.EPX.0000443988.38424.9d.
[62] C. N. Tagousop, J.-D. Tamokou, S. E. Ekom, D. Ngnokam, and L. Voutquenne-Nazabadioko, “Antimicrobial activities of flavonoid glycosides from Graptophyllum grandulosum and their mechanism of antibacterial action.,” BMC Complement. Altern. Med., vol. 18, no. 1, p. 252, Sep. 2018, doi:10.1186/s12906-018-2321-7.
[63] N. F. Shamsudin et al., “Antibacterial Effects of Flavonoids and Their Structure-Activity Relationship Study: A Comparative Interpretation.,” Mol. Basel Switz., vol. 27, no. 4, Feb. 2022, doi:10.3390/molecules27041149.
[64] D. Mabhiza, T. Chitemerere, and S. Mukanganyama, “Antibacterial Properties of Alkaloid Extracts from Callistemon citrinus and Vernonia adoensis against Staphylococcus aureus and Pseudomonas aeruginosa.,” Int. J. Med. Chem., vol. 2016, p. 6304163, 2016, doi:10.1155/2016/6304163.
[65] Y. Bare, D. R. T. Sari, M. C. Mogi, and M. M. D. Nurak, “Fucodiphlorethol Dan Phloroglucinol Alga Coklat Sebagai Inhibitor Lipase Secara In Silico,” Florea J. Biol. Dan Pembelajarannya, vol. 9, no. 1, pp. 53–59, 2022.
[66] G. C. Sari, Dewi Ratih Tirto; Krisnamurti, “1-dehydrogingerdione , Senyawa Volatil Jahe sebagai Agen Sedatif subtitutif γ - aminobutyrate ( GABA ); Kajian Biokomputasi,” Pros. Semin. Nas. Biol., vol. 7, no. 1, pp. 389–395, 2021, doi:10.24252/psb.v7i1.24709.
[67] G. C. Krisnamurti and D. R. T. Sari, “Unveiling the Potency of Coriandrum sativum as Repellent for Antimalarial : In silico Study,” Proceeding Int. Conf. Relig. Sci. Educ., vol. 2, pp. 563–567, 2023.
[68] D. R. T. Sari and G. C. Krisnamurti, “In Silico Repositioning Strategies of Theobromine and Caffeine for Psychiatric and Neurological Disorders,” Proceeding Int. Conf. Relig. Sci. Educ., vol. 1, pp. 685–692, 2022.
[69] Y. Bare, F. N. S. Timba, M. M. D. Nurak, and D. R. T. Sari, “Analisis In silico Heksosa, D-Manitol dan Asam Malat Kulit Kopi sebagai Penghambat Infeksi Virus Corona,” Biota J. Ilm. Ilmu-Ilmu Hayati, vol. 8, no. 2, pp. 41–48, 2023, doi:10.24002/biota.v8i2.5970.
[70] D. R. T. Sari, A. Safitri, J. R. K. Cairns, and F. Fatchiyah, “Anti-Apoptotic Activity of Anthocyanins has Potential to inhibit Caspase-3 Signaling,” J. Trop. Life Sci., vol. 10, no. 1, pp. 15–25, 2020, doi:10.11594/jtls.10.01.03.
[71] D. R. T. Sari, M. E. Pranoto, and S. Z. Azkiyah, “Kajian Farmakoinformatika Senyawa Alkaloid Anggur Laut (Caulerpa racemose) Sebagai Inhibitor Collagenase Dalam Mekanisme Antiaging,” Florea J. Biol. Dan Pembelajarannya, vol. 9, no. 2, pp. 127–133, 2022, doi:10.25273/florea.v9i2.14434.
[72] J. L. Pederick, A. P. Thompson, S. G. Bell, and J. B. Bruning, “d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations.,” J. Biol. Chem., vol. 295, no. 23, pp. 7894–7904, Jun. 2020, doi:10.1074/jbc.RA120.012936.
[73] S. Yang et al., “The Biological Properties and Potential Interacting Proteins of d-Alanyl-d-alanine Ligase A from Mycobacterium tuberculosis.,” Mol. Basel Switz., vol. 23, no. 2, Feb. 2018, doi:10.3390/molecules23020324.
[74] J. J. May et al., “Inhibition of the D-alanine:D-alanyl carrier protein ligase from Bacillus subtilis increases the bacterium’s susceptibility to antibiotics that target the cell wall.,” FEBS J., vol. 272, no. 12, pp. 2993–3003, Jun. 2005, doi:10.1111/j.1742-4658.2005.04700.x.