Xylaria sp.; The Candle Snuff Fungus from West Java
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Published:
Aug 22, 2021
Keywords:
Ascomycota, Bean-Shaped, Herbarium Bogoriense, Stromata
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Abstract
Candle snuff fungus belongs to Xylaria group. Generally, Xylaria has a form like stick or candle or elongated fruit of shapes. Xylaria is classified into Ascomycota within Xylariaceae. This study found one species of candle-shaped mushroom in IPB Unversity. This study aimed to identified and characterized the specimen using molecular and morphological data. The specimen was collected and preservedinto FAA solution and deposited into Herbarium Bogoriense as BO 24426. Molecular analyses using Large Subunit as a region for amplification showed that the BO 24426 was classified into Xylaria sp. This species closes to Xylaria consociata. The stromata were erected, unbranched, and tapered to the apex. The texture was rigid and hard. Ascus bore 8 ascospores. The ascospores were fusiform or bean-shaped and smooth. The morphological observations supported molecular identification of BO 24426 as Xylaria sp. Other genes were needed to ensure the exact species of Xylaria
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Xylaria sp.; The Candle Snuff Fungus from West Java. (2021). Jurnal Biota, 7(2), 77-84. https://doi.org/10.19109/Biota.v7i2.8138
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How to Cite
Xylaria sp.; The Candle Snuff Fungus from West Java. (2021). Jurnal Biota, 7(2), 77-84. https://doi.org/10.19109/Biota.v7i2.8138
References
Brandt, B. W., Zwaan, B. J., Beekman, M., Westendorp, R. G. J., & Slagboom, P. E. (2005). Shuttling Between Species
for Pathways of Lifespan Regulation: A Central Role for the Vitellogenin Gene Family? BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology, 27(3), 339–346. https://doi.org/10.1002/bies.20161
Brundrett, M., Bougher, N., Dell, B., Grove,T., & Malajczuk, N. (1996). Working with Mycorrhizas in Forestry and Agriculture. AClAR Monograph 32. Fournier, J., Lechat, C., & Courtecuisse, R. (2018). The Genus Xylaria sensu lato
(Xylariaceae) in Guadeloupe and Martinique (French West Indies) I. Taxa with penzigioid stromata. Ascomycete.Org, 10(4), 131–176. https://doi.org/10.25664/art-0239
Hermawan, R., Amelya, M. P., & Julia, Z. R. (2020). Trichaleurina Javanica from West Java. Jurnal Mikologi Indonesia,
4(2), 175–181. https://doi.org/10.46638/jmi.v4i2.85
Hermawan, R., Fusvita, L., Nugraha, N. H., & Amelya, M. P. (2021). Morphological Characteristic and Phenetic
Relationship of Lysurus periphragmoides Collected from West Java. Jurnal Biodjati, 6(1), 102–110. https://doi.org/10.15575/biodjati.v6i1.10724
Hermawan, R., Imaningsih, W., & Badruzsaufari. (2020). Mushrooms Assumed as Ectomycorrhizal Fungi on South Kalimantan Serpentine Soil. Jurnal Mikologi Indonesia, 4(1), 149–155. https://doi.org/10.46638/jmi.v4i1.71
Hermawan, R., & Maulana, I. (2020). Sphaerobolus stellatus: Cannonball Mushroom from West Java. Jurnal Mikologi Indonesia, 4(2), 218–222. https://doi.org/10.46638/jmi.v4i2.86
Hermawan, R., & Putra, I. P. (2018). Calvatia pyriformis: A New Record in Indonesia. Jurnal Sains DanTeknologi,
1(2), 26–29. https://doi.org/10.31764/justek.vXiY.3737
Hermawan, R., & Putra, I. P. (2021). Calvatia rugosa: Epigeous Puffball Mushroom Reported from West Java. Science
Education and Application Journal, 3(1), 1–6. https://doi.org/10.30736/seaj.v3i1.331 Index Fungorum. (2021). Xylaria.
http://www.indexfungorum.org/names /names.asp
Ju, Y.-M., Hsieh, H.-M., Vasilyeva, L., & Akulov, A. (2009). Three new Xylaria species from Russian Far Eas. Mycologia, 101(4), 548–553. https://doi.org/10.3852/08-188
Kirk, P. M., Cannon, P. F., Minter, D. W., & Stalpers, J. A. (2008). Ainsworth and Bisby’s Dictionary of the Fungi. CABI
Publishing.
Kristin, R., Rahmawati, R., & Mukarlina, M. (2020). Inventarisasi Jamur Makroskopis Filum Ascomycota di Kawasan Universitas Tanjungpura Pontianak Kalimantan Barat. Jurnal Protobiont, 9(1), 36–40. http://dx.doi.org/10.26418/protobiont.v9i1.40555
Ma, H.-X., Vasilyeva, L., & Li, Y. (2013). The genus Xylaria (Xylariaceae) in the south of China—6. A new Xylaria species based on morphological and molecular characters. Phytotaxa, 147(2), 48–54. http://dx.doi.org/10.11646/phytotaxa.147.2.2
Mycobank. (2021). Xylaria. https://www.mycobank.org
Okane, I., Toyama, K., Nakagiri, A., Suzuki, K., Srikitikulchai, P., Sivichai, S., Hywel-Jones, N., Potacharoen, W., &
Læssøe, T. (2008). Study of endophytic Xylariaceae in Thailand: Diversity and taxonomy inferred from rDNA sequence analyses with saprobes forming fruit bodies in the field. Mycoscience, 49(6), 359–372.https://doi.org/10.1007/S10267-0080440-6
Petrini, O.(1991). Fungal Endophytes of TreeLeaves. In: Andrews J.H., Hirano S.S.(eds) Microbial Ecology of Leaves.Brock/Springer Series in Contemporary Bioscience.
Rogers, J. D., Ju, Y.-M., & Lehmann, J.(2005). Some Xylaria species on termite nests. Mycologia, 97(4), 914–923. https://doi.org/10.1080/15572536.2006.11832783
Rogers, J. D., & Samuels, G. J. (1986). Ascomycetes of New Zealand 8.Xylaria. New Zealand Journal of Botany, 24(4),
615–650. https://doi.org/10.1080/0028825X.1986.10409947
Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, CA., Chen, W., & Consortium, F. B(2012). Nuclear ribosomal internatranscribed spacer (ITS) region as auniversal DNA barcode marker forFungi. Proceedings of The NationalAcademy of Sciences of The UnitedStates of America, 109(16), 6241–6246. https://doi.org/10.1073/pnas.1117018109
Seshagirirao, K., Harikrishnanaik, L., Venumadhav, K., Nanibabu, B., Jamir, K., Ratnamma, B. K., Jena, R., & Babarao, D. K. (2016). Preparation of Herbarium Specimen for Plant Identification and Voucher Number. Roxburghia, 6(1–4), 111–119.
Stamatakis, A. (2014). RAxML version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies.
Bioinformatics (Oxford, England), 30(9), 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
Sutton, S. V. W., & Cundell, A. M. (2004). Microbial Identification in the PharmaceuticaI Industry. Pharmacopeial Forum, 30(5), 1884–1894. http://www.microbiologynetwork.com
Whalley, A. J. S. (1996). The xylariaceous way of life. Mycological Research, 100(8), 897–922. https://doi.org/10.
1016/S0953-7562(96)80042-6
White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and Direct Sequencing of Fungal Ribosomal RNA
Genes for Phylogenetics. PCR Protocols: A Guide to Methods and Applications, 315–322. http://dx.doi.org/10.1016/b978-0-12-3721808.50042-1
for Pathways of Lifespan Regulation: A Central Role for the Vitellogenin Gene Family? BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology, 27(3), 339–346. https://doi.org/10.1002/bies.20161
Brundrett, M., Bougher, N., Dell, B., Grove,T., & Malajczuk, N. (1996). Working with Mycorrhizas in Forestry and Agriculture. AClAR Monograph 32. Fournier, J., Lechat, C., & Courtecuisse, R. (2018). The Genus Xylaria sensu lato
(Xylariaceae) in Guadeloupe and Martinique (French West Indies) I. Taxa with penzigioid stromata. Ascomycete.Org, 10(4), 131–176. https://doi.org/10.25664/art-0239
Hermawan, R., Amelya, M. P., & Julia, Z. R. (2020). Trichaleurina Javanica from West Java. Jurnal Mikologi Indonesia,
4(2), 175–181. https://doi.org/10.46638/jmi.v4i2.85
Hermawan, R., Fusvita, L., Nugraha, N. H., & Amelya, M. P. (2021). Morphological Characteristic and Phenetic
Relationship of Lysurus periphragmoides Collected from West Java. Jurnal Biodjati, 6(1), 102–110. https://doi.org/10.15575/biodjati.v6i1.10724
Hermawan, R., Imaningsih, W., & Badruzsaufari. (2020). Mushrooms Assumed as Ectomycorrhizal Fungi on South Kalimantan Serpentine Soil. Jurnal Mikologi Indonesia, 4(1), 149–155. https://doi.org/10.46638/jmi.v4i1.71
Hermawan, R., & Maulana, I. (2020). Sphaerobolus stellatus: Cannonball Mushroom from West Java. Jurnal Mikologi Indonesia, 4(2), 218–222. https://doi.org/10.46638/jmi.v4i2.86
Hermawan, R., & Putra, I. P. (2018). Calvatia pyriformis: A New Record in Indonesia. Jurnal Sains DanTeknologi,
1(2), 26–29. https://doi.org/10.31764/justek.vXiY.3737
Hermawan, R., & Putra, I. P. (2021). Calvatia rugosa: Epigeous Puffball Mushroom Reported from West Java. Science
Education and Application Journal, 3(1), 1–6. https://doi.org/10.30736/seaj.v3i1.331 Index Fungorum. (2021). Xylaria.
http://www.indexfungorum.org/names /names.asp
Ju, Y.-M., Hsieh, H.-M., Vasilyeva, L., & Akulov, A. (2009). Three new Xylaria species from Russian Far Eas. Mycologia, 101(4), 548–553. https://doi.org/10.3852/08-188
Kirk, P. M., Cannon, P. F., Minter, D. W., & Stalpers, J. A. (2008). Ainsworth and Bisby’s Dictionary of the Fungi. CABI
Publishing.
Kristin, R., Rahmawati, R., & Mukarlina, M. (2020). Inventarisasi Jamur Makroskopis Filum Ascomycota di Kawasan Universitas Tanjungpura Pontianak Kalimantan Barat. Jurnal Protobiont, 9(1), 36–40. http://dx.doi.org/10.26418/protobiont.v9i1.40555
Ma, H.-X., Vasilyeva, L., & Li, Y. (2013). The genus Xylaria (Xylariaceae) in the south of China—6. A new Xylaria species based on morphological and molecular characters. Phytotaxa, 147(2), 48–54. http://dx.doi.org/10.11646/phytotaxa.147.2.2
Mycobank. (2021). Xylaria. https://www.mycobank.org
Okane, I., Toyama, K., Nakagiri, A., Suzuki, K., Srikitikulchai, P., Sivichai, S., Hywel-Jones, N., Potacharoen, W., &
Læssøe, T. (2008). Study of endophytic Xylariaceae in Thailand: Diversity and taxonomy inferred from rDNA sequence analyses with saprobes forming fruit bodies in the field. Mycoscience, 49(6), 359–372.https://doi.org/10.1007/S10267-0080440-6
Petrini, O.(1991). Fungal Endophytes of TreeLeaves. In: Andrews J.H., Hirano S.S.(eds) Microbial Ecology of Leaves.Brock/Springer Series in Contemporary Bioscience.
Rogers, J. D., Ju, Y.-M., & Lehmann, J.(2005). Some Xylaria species on termite nests. Mycologia, 97(4), 914–923. https://doi.org/10.1080/15572536.2006.11832783
Rogers, J. D., & Samuels, G. J. (1986). Ascomycetes of New Zealand 8.Xylaria. New Zealand Journal of Botany, 24(4),
615–650. https://doi.org/10.1080/0028825X.1986.10409947
Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, CA., Chen, W., & Consortium, F. B(2012). Nuclear ribosomal internatranscribed spacer (ITS) region as auniversal DNA barcode marker forFungi. Proceedings of The NationalAcademy of Sciences of The UnitedStates of America, 109(16), 6241–6246. https://doi.org/10.1073/pnas.1117018109
Seshagirirao, K., Harikrishnanaik, L., Venumadhav, K., Nanibabu, B., Jamir, K., Ratnamma, B. K., Jena, R., & Babarao, D. K. (2016). Preparation of Herbarium Specimen for Plant Identification and Voucher Number. Roxburghia, 6(1–4), 111–119.
Stamatakis, A. (2014). RAxML version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies.
Bioinformatics (Oxford, England), 30(9), 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
Sutton, S. V. W., & Cundell, A. M. (2004). Microbial Identification in the PharmaceuticaI Industry. Pharmacopeial Forum, 30(5), 1884–1894. http://www.microbiologynetwork.com
Whalley, A. J. S. (1996). The xylariaceous way of life. Mycological Research, 100(8), 897–922. https://doi.org/10.
1016/S0953-7562(96)80042-6
White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990). Amplification and Direct Sequencing of Fungal Ribosomal RNA
Genes for Phylogenetics. PCR Protocols: A Guide to Methods and Applications, 315–322. http://dx.doi.org/10.1016/b978-0-12-3721808.50042-1